CoSBBI: Computer Science, Biology and Biomedical Informatics



CoSBBI Co-Directors:
Michael Ding
  dingm@pitt.edu

David Boone
  booned@upmc.edu

Mike Becich
  becich@pitt.edu



Program Coordinator:
Lucy Cafeo
  cafeo@pitt.edu



Schedule:

Date
Time
Topic
Presenter
Resources
Week 1
13 June
Monday
7:00 AM-5:00 PM
UPCI Academy Bootcamp at Hillman Cancer Center
14 June
Tuesday
9:00 AM - 9:30 AM
9:30 AM - 10:00 AM
10:00 AM - 11:00 AM
12:00 PM
Welcome Breakfast
Orientation
Lecture 1: Cancer/Molecular Biology/Genomics
Mentor Meetings


David Boone & Michael Ding
David Boone





Slides

15 June
Wednesday
9:00 AM - 10:00 AM
10:00 AM - 11:00 AM
Lecture 2: Statistical Foundations
Lecture 3: Machine Learning
Joyeeta Dutta-Moscato
Michael Ding
Slides
Slides
16 June
Thursday
9:00 AM - 10:00 AM
10:00 AM - 11:00 AM
Introduction to Journal Club
Programming Workshop I
Michael Ding
Michael Ding & David Boone
Nat Genet - Gatza 2014
Shadish Chapter 2 - Validity


17 June
Friday
2:00 PM - 4:00 PM University of Pittsburgh Tour
Week 2
20 June
Monday
9:00 AM - 10:00 AM
Lecture 4: Electronic Health Records
Andrew J. King
21 June
Tuesday
10:00 AM - 11:00 AM
1:00 PM - 2:00 PM
Informatics Careers
Literature Search and Reference Management
Mike Becich
Katrina Romagnoli
Slides
J Pathol Inform - Dutta-Moscato 2014
J Pathol Inform - Upal 2016
Slides


22 June
Wednesday
8:30 AM - 10:00 AM
UPMC Building Tour and Talk

24 June
Friday
3:00 PM - 4:30 PM Research Proposal Presentations

Week 3
27 June
Monday
9:00 AM - 10:00 AM
Foundation Medicine
29 June
Wednesday
8:30 AM - 10:00 AM
Diversity Workshop, Hillman Cancer Center
Paula Davis

30 June
Thursday
9:00 AM - 12:00 PM
Pittsburgh Supercomputing Center Tour


1 July
Friday
9:00 AM - 10:30 AM
Journal Club I
Aditi Chattopadhyay
Cecelia Baek
Sci Rep - Su 2016
Nat Genet - Bueno 2016
Week 4
4 July
Monday

4th of July
6 July
Wednesday
8:00 AM - 10:00 AM
Time Management, Hillman Cancer Center
Chenits Pettigrew

7 July
Thursday
9:00 AM ~ 11:00 AM
11:00 AM - 12:00 PM
12:00 PM - 2:00 PM
College
Omnyx
DBMI Rooftop Barbecue
David Jacob & Mara Staines
Katy Wack
Mike Becich




Please RSVP to e-mail invite.
8 July
Friday
9:00 AM - 10:30 AM
Journal Club II
Anay Gupta
Albert Liu
Kevin Chen
JMIR Res Protoc - Boyce 2016
PNAS - Hart 2015
Proc UAI - Cheng 1999
Week 5
11 July
Monday
9:00 AM - 10:00 AM
10:00 AM - 11:00 AM
Faculty Lecture
Research Roundtable I
Richard Boyce

12 July
Tuesday
9:00 AM - 10:00 AM
10:00 AM - 11:00 AM
Research Roundtable I
Faculty Lecture


Vanathi Gopalakrishnan

13 July
Wednesday
8:00 AM - 10:00 AM
Translational Medicine, Hillman Cancer Center
Leadership, Hillman Cancer Center
Steffi Oesterreich
Michaels Sider-Rose

14 July
Friday
9:00 AM - 10:30 AM
Journal Club III
Shania Khatri
Emilia Porubcin
Pineda 2016
Proc ICAI - Chai 2001
Week 6
18 July
Monday
9:00 AM - 10:00 AM
Presentation Tips and Logistics
David Boone
Presentation Tips
Poster Tips
Poster Template
20 July
Wednesday
8:00 AM - 10:00 AM
Communication, Hillman Cancer Center
Data Blitz, Hillman Cancer Center
John Radzilowicz


21 July
Friday
3:00 PM - 4:00 PM
Journal Club IV
Austin Chen
Christopher Lee
Julia Miklasevich

AMIA - DeMarco 2016
Nature - Minn 2005
N Engl J Med - Paik 2004
J Clin Oncol - Paik 2006
Week 7
21 July
Friday
1:00 - 2:00 PM
Research Roundtable II


Week 7
27 July
Wednesday
8:00 AM - 10:00 AM
Final Questions, Data Blitz, Hillman Cancer Center


Week 8
1 August
Monday
9:00 AM
Practice Presentations


2 August
Tuesday
9:00 AM
Practice Presentations


5 August
Friday
9:00 AM - 12:00 PM
1:30 PM
Final Presentations
Poster Session, Hillman Cancer Center

Schedule